Attributions¶
VSN-Pipelines is a collection of workflows targeted toward the analysis of single cell data. VSN is dependendent on, and takes functions from many tools, developed both internally and externally, which are listed here.
Tools¶
- GreenleafLab/ArchR
- caleblareau/bap
- lh3/bwa
- Samtools
- campbio/celda
- Directs
- DropletUtils
- Drop-seq Tools
- EDirect
- OpenGene/fastp
- hangnoh/flybaseR
- dweemx/flybaseR
- immunogenomics/harmony
- pcacv
- Picard
- statgen/popscle
- aertslab/popscle_helper_tools
- aertslab/cisTopic
- theislab/scanpy
- aertslab/pySCENIC
- aertslab/SCENIC
- swolock/scrublet
- aertslab/single_cell_toolkit
- timoast/sinto
- constantAmateur/SoupX
- ncbi/sra-tools
- alexdobin/STAR
- Trim Galore